Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs744051 chr12:56667298 C/T 9.28E-8 178 0.8 27.33 25.08 KM Plot
PCPG rs74437292 chr10:131549953 ATTT/A 7.48E-6 176 25 27.27 14.25 KM Plot
PCPG rs74456459 chr2:61578601 TA/T 6.1E-5 178 24.1 30.18 10.3 KM Plot
PCPG rs74457055 chr8:53842669 T/G 0.000433 173 24.47 27.27 6.1 KM Plot
PCPG rs74459344 chr3:53099595 A/G 7.69E-6 175 25.08 26.57 11.78 KM Plot
PCPG rs74464266 chr17:80514914 A/T 4.21E-5 178 25.97 19.72 7.2 KM Plot
PCPG rs74496027 chr12:56726340 C/T 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs74513657 chr3:53336459 A/G 0.000189 178 25.17 39.3 26.73 KM Plot
PCPG rs7452300 chr6:131714738 C/T 5.68E-6 178 25 27.2 17.8 KM Plot
PCPG rs74532786 chr2:176133280 T/C 0.000152 174 25.4 28.47 6.62 KM Plot
PCPG rs74542234 chr16:89940608 A/C 0.000194 174 25.87 20.17 36.37 KM Plot
PCPG rs74571727 chr2:237535062 C/T 1.11E-16 170 25.17 24.77 3.17 KM Plot
PCPG rs74581045 chr2:118529724 A/C 1.76E-5 177 25.4 28.45 11.65 KM Plot
PCPG rs74673257 chr12:56638077 T/C 9.68E-8 178 25.17 29.13 0.8 KM Plot
PCPG rs746857 chr2:136554890 G/A 3.21E-5 174 9.72 24.1 25.67 KM Plot